Machine learning

Models that combine transcriptomic with spatial protein information exceed the predictive value for either single modality

Immunotherapy has reshaped the field of cancer therapeutics but the population that benefits are small in many tumor types, warranting a companion diagnostic test. While immunohistochemistry (IHC) for programmed death-ligand 1 (PD-L1) or mismatch …

Auto-generating GitHub commit messages using textgenrnn

a quick tutorial of using `PyGitHub` and `textgenrnn` in Jupyter notebook

Extracting topics from cancer patients' mutational profiles

An application of topic modeling in genomic data

Extracting topics from cancer patients' mutational profiles

An introduction on how to apply topic modeling on somatic mutations